name: small_rna
version: 0.0.2
output_asset_class: small_rna
description: Small RNA sequences in the FASTA format. A predicted hairpin portion of a miRNA transcript and information on the location and sequence of the mature miRNA sequence
input_files:
  hairpin:
    description: FASTA format sequences of all miRNA hairpins
  mature:
    description: FASTA format sequences of all mature miRNA sequences
input_params: null
input_assets: null
docker_image: null
command_templates:
  - cp {{values.files["hairpin"]}} {{values.output_folder}}/{{values.genome_digest}}_hairpin.fa
  - cp {{values.files["mature"]}} {{values.output_folder}}/{{values.genome_digest}}_mature.fa
default_asset: "default"
tags:
- small-rna
- mirna
- non-coding
outputs:
- pattern: '*_hairpin.fa'
  description: miRNA hairpin sequences in FASTA format
- pattern: '*_mature.fa'
  description: Mature miRNA sequences in FASTA format
resources:
  memory: 1GB
  disk: 1GB
  time: 10m
test:
  commands:
  - test -f {output_dir}/{genome}_hairpin.fa
  - test -f {output_dir}/{genome}_mature.fa
metadata:
  author: nsheff
  created: '2026-05-20'
  license: BSD-2-Clause