name: fasta
version: 0.1.0
output_asset_class: fasta
description:
  DNA sequences in the FASTA format, exported from RefgetStore. Includes
  FASTA index (.fai) and chromosome sizes file. Requires genome to be
  initialized in RefgetStore first (via refgenie genome init).
input_files: null
input_params: null
input_assets: null
docker_image: null
command_templates:
  - refgenie-build-fasta {{values.refget_store_path}} {{values.genome_digest}} {{values.output_folder}}
default_asset: "default"

# --- Additive non-runtime metadata (ignored by the builder) ---
tags:
- reference
- sequence
- foundational
outputs:
- pattern: '*.fa'
  description: Reference genome FASTA file
- pattern: '*.fa.fai'
  description: FASTA index file
- pattern: '*.chrom.sizes'
  description: Chromosome sizes file
test:
  commands:
  - test -f {output_dir}/{genome}.fa
  - test -f {output_dir}/{genome}.fa.fai
  - test -f {output_dir}/{genome}.chrom.sizes
  - head -1 {output_dir}/{genome}.fa | grep -q "^>"
resources:
  memory: 4GB
  disk: 15GB
  time: 1h
metadata:
  author: nsheff
  created: '2026-05-20'
  license: BSD-2-Clause